Got this from Yoru: A manga cafe (it's been so long since I last heard from Flori!) in Makati! Near Makati Cinema Square.
Of course a few years ago, there was this Japanese "shop" at an undisclosed site in Makati (in H.V. dela Costa St. actually) which loaned manga and anime (on VHS tapes). Of course it wasn't an authentic manga cafe in the sense that it had tables and ambience... it was more like a small library (about the size of a convenience store) where Japanese patrons could do some shopping and browse through manga and rent the various VHS tapes.